AMAditya Mehtainmehta-bytes.hashnode.dev·Nov 2, 2025 · 1 min readThe Scientist's Toolkit: Guide to In Vivo, In Vitro, In Silico and more...These aren’t just academic jargons, they are short ways to describe fundamental choices in an experiment. In Vivo It means, “In the living”. This is the gold standard for seeing how something works in a real, complete biological system. In Vitro It m...00
AMAditya Mehtainmehta-bytes.hashnode.dev·Oct 31, 2025 · 2 min readPhysical Significance of Partition FunctionsThe partition function refers to the statistical count of the total number of states that a system can access thermally at a given temperature. It has direct mathematical relationships to thermodynamic potentials, like free energy. Hence, by knowing ...00
AMAditya Mehtainmehta-bytes.hashnode.dev·Oct 28, 2025 · 1 min readWhy Statistical Mechanics?Statistical Mechanics provides the microscopic justification for the macroscopic properties i.e. it connects the dots between the behaviour of individual atoms and molecules and the bulk properties we observe, like temperature and pressure. Microstat...00
AMAditya Mehtainmehta-bytes.hashnode.dev·Oct 19, 2025 · 2 min readPost-simulation analysis - Using MDAnalysisExceeding the analysis limitations of InBuild GROMACS commands (since, I use GROMACS mainly for my simulations) The analysis presented below gives results which may not be calculated using the built-in commands of GROMACS easily, but give important i...00
AMAditya Mehtainmehta-bytes.hashnode.dev·Sep 13, 2025 · 8 min readMonte Carlo Simulation of a 2D Ising ModelWhat is it? One of the most fundamental and extensively studied models in statistical mechanics. It offers a powerful framework for understanding phase transitions and collective behaviour in systems of interacting particles. 2D form of the Ising Mod...00
