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HKHimansu Kumarinbiodatascience.hashnode.dev

Generating Predicted Aligned Error (PAE) Plots from AlphaFold Output Files

Dec 20, 2024 · 3 min read · What is PAE? The Predicted Aligned Error (PAE) is a critical output from AlphaFold that estimates the pairwise confidence of residue positions within a predicted protein structure. Unlike pLDDT, which provides confidence scores for individual residue...

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